species:   Rhsol
pid:       PID0547
parent:    Rhi-milR-160
paralog:   
locus:     KB317723.1:322390-322465
matures:   ['UUAGUUCCAAUUUCGUGUCCGG', 'GCAAGCUGACCCGAUUUUGGGACUAGUACC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317723.1:322390-322465

1 out of bounds
60 alignments
60 proper strand
59 stranded perfect matches

       *************************    *********************************       
GAGAAGAAGGUUAGUUCCAAUUUCGUGUCCGGACCAACGCAAGCUGACCCGAUUUUGGGACUAGUACCUUCUUAAA
...(((((((((((((((((..(((.(((((......))......))).)))..)))))))))..))))))))...
----------UUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=22 a=1 c
--------------------------------------GCAAGCUGACCCGAUUUUGGGACUAGUACC-------- l=30 a=0 c*
---------GUUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=23 a=31 ma
--------------------------------------GCAAGCUGACCCGAUUUUGGGACUAGUACCU------- l=31 a=0 ma*

-------------GUUCCAAUUUCGUGUCCGGA------------------------------------------- l=20 a=1 
-----------UAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=21 a=4 
-----------UAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=22 a=1 
----------UUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=22 a=1 (c)
----------UUAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=23 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGG-------------------------------------------- l=23 a=31 (ma)
---------GUUAGUUCCAAUUUuGUGUCCGG-------------------------------------------- l=23 a=1 
---------GUUAGUUCCAAUUUCGUGUCCGGA------------------------------------------- l=24 a=15 
---------GUUAGUUCCAAUUUCGUGUCCGGAC------------------------------------------ l=25 a=5 

mb-01011
ax-1001111
ku-01
ss-111111101010
fn-111
